Backbone-dependent rotamer library

Backbone-dependent rotamer library for serine. Each plot shows the population of the χ1 rotamers of serine as a function of the backbone dihedral angles φ and ψ

In biochemistry, a backbone-dependent rotamer library provides the frequencies, mean dihedral angles, and standard deviations of the discrete conformations (known as rotamers) of the amino acid side chains in proteins as a function of the backbone dihedral angles φ and ψ of the Ramachandran map. By contrast, backbone-independent rotamer libraries express the frequencies and mean dihedral angles for all side chains in proteins, regardless of the backbone conformation of each residue type. Backbone-dependent rotamer libraries have been shown to have significant advantages over backbone-independent rotamer libraries, principally when used as an energy term, by speeding up search times of side-chain packing algorithms used in protein structure prediction and protein design.[1]

  1. ^ Cite error: The named reference HPZ2020 was invoked but never defined (see the help page).