Nanopore

Schematic of Nanopore Internal Machinery and corresponding current blockade during sequencing

A nanopore is a pore of nanometer size. It may, for example, be created by a pore-forming protein or as a hole in synthetic materials such as silicon or graphene.

When a nanopore is present in an electrically insulating membrane, it can be used as a single-molecule detector. It can be a biological protein channel in a high electrical resistance lipid bilayer, a pore in a solid-state membrane or a hybrid of these – a protein channel set in a synthetic membrane. The detection principle is based on monitoring the ionic current passing through the nanopore as a voltage is applied across the membrane. When the nanopore is of molecular dimensions, passage of molecules (e.g., DNA) cause interruptions of the "open" current level, leading to a "translocation event" signal. The passage of RNA or single-stranded DNA molecules through the membrane-embedded alpha-hemolysin channel (1.5 nm diameter), for example, causes a ~90% blockage of the current (measured at 1 M KCl solution).[1]

It may be considered a Coulter counter for much smaller particles.[2]

  1. ^ Akeson M, Branton D, Kasianowicz JJ, Brandin E, Deamer DW (December 1999). "Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules". Biophysical Journal. 77 (6): 3227–33. Bibcode:1999BpJ....77.3227A. doi:10.1016/S0006-3495(99)77153-5. PMC 1300593. PMID 10585944.
  2. ^ Cornell, B. A.; Braach-Maksvytis, V. L. B.; King, L. G.; Osman, P. D. J.; Raguse, B.; Wieczorek, L.; Pace, R. J. (June 1997). "A biosensor that uses ion-channel switches". Nature. 387 (6633): 580–583. Bibcode:1997Natur.387..580C. doi:10.1038/42432. ISSN 0028-0836. PMID 9177344. S2CID 4348659.