PLD3

PLD3
Identifiers
AliasesPLD3, AD19, HU-K4, HUK4, phospholipase D family member 3, SCA46
External IDsOMIM: 615698; MGI: 1333782; HomoloGene: 7893; GeneCards: PLD3; OMA:PLD3 - orthologs
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_001031696
NM_001291311
NM_012268

NM_011116
NM_001317355

RefSeq (protein)

NP_001026866
NP_001278240
NP_036400

NP_001304284
NP_035246

Location (UCSC)Chr 19: 40.35 – 40.38 MbChr 7: 27.23 – 27.25 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Phospholipase D3, also known as PLD3, is a protein that in humans is encoded by the PLD3 gene.[5][6] PLD3 belongs to the phospholipase D superfamily because it contains the two HKD motifs common to members of the phospholipase D family, however, it has no known catalytic function similar to PLD1 or PLD2. PLD3 serves as a ssDNA 5' exonuclease in antigen presenting cells.[7] PLD3 is highly expressed in the brain in both humans and mice, and is mainly localized in the endoplasmic reticulum (ER) and the lysosome.

PLD3 may play a role in regulating the lysosomal system, myogenesis, late-stage neurogenesis, inhibiting insulin signal transduction, and amyloid precursor protein (APP) processing. The involvement in PLD3 in the lysosomal system and in APP processing and the loss-of-function mutations in PLD3 are thought to be linked to late-onset Alzheimer's disease (LOAD).[8][9] However, there are also studies that challenge the association between PLD3 and Alzheimer's disease (AD).[10][11][12][13][14]

How APP processing is affected by PLD3 during AD still remains unclear, and its role in the pathogenesis of AD is ambiguous.[14][15] PLD3 may contribute to the onset of AD by a mechanism other than by influencing APP metabolism, with one proposed mechanism suggesting that PLD3 contributes to the onset of AD by impairing the endosomal-lysosomal system.[14] In 2017, PLD3 was shown to have an association with another neurodegenerative disease, spinocerebellar ataxia.[16]

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000105223Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000003363Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ "Entrez Gene: Phospholipase D family, member 3".
  6. ^ Universal protein resource accession number Q8IV08 for "PLD3 - Phospholipase D3 - Homo sapiens" at UniProt.
  7. ^ Gavin AL, Huang D, Huber C, et al. (September 2018). "PLD3 and PLD4 are single-stranded acid exonucleases that regulate endosomal nucleic-acid sensing". Nature Immunology. 19 (9): 942–953. doi:10.1038/s41590-018-0179-y. PMC 6105523. PMID 30111894.
  8. ^ Cruchaga C, Karch CM, Jin SC, et al. (January 2014). "Rare coding variants in the phospholipase D3 gene confer risk for Alzheimer's disease". Nature. 505 (7484): 550–554. Bibcode:2014Natur.505..550.. doi:10.1038/nature12825. PMC 4050701. PMID 24336208.
  9. ^ Zhang DF, Fan Y, Wang D, et al. (August 2016). "PLD3 in Alzheimer's Disease: a Modest Effect as Revealed by Updated Association and Expression Analyses". Molecular Neurobiology. 53 (6): 4034–4045. doi:10.1007/s12035-015-9353-5. PMID 26189833. S2CID 15660705.
  10. ^ Heilmann S, Drichel D, Clarimon J, et al. (April 2015). "PLD3 in non-familial Alzheimer's disease". Nature. 520 (7545): E3-5. Bibcode:2015Natur.520E...3H. doi:10.1038/nature14039. PMID 25832411. S2CID 205241800.
  11. ^ Hooli BV, Lill CM, Mullin K, et al. (April 2015). "PLD3 gene variants and Alzheimer's disease". Nature. 520 (7545): E7-8. Bibcode:2015Natur.520E...7H. doi:10.1038/nature14040. PMID 25832413. S2CID 4388686.
  12. ^ Lambert JC, Grenier-Boley B, Bellenguez C, et al. (April 2015). "PLD3 and sporadic Alzheimer's disease risk". Nature. 520 (7545): E1. Bibcode:2015Natur.520E...1L. doi:10.1038/nature14036. PMID 25832408. S2CID 52869488.
  13. ^ Jiao B, Liu X, Tang B, et al. (October 2014). "Investigation of TREM2, PLD3, and UNC5C variants in patients with Alzheimer's disease from mainland China". Neurobiology of Aging. 35 (10): 2422.e9–2422.e11. doi:10.1016/j.neurobiolaging.2014.04.025. PMID 24866402. S2CID 140208846.
  14. ^ a b c Fazzari P, Horre K, Arranz AM, et al. (January 2017). "PLD3 gene and processing of APP" (PDF). Nature. 541 (7638): E1–E2. Bibcode:2017Natur.541E...1F. doi:10.1038/nature21030. PMID 28128235. S2CID 1131827.
  15. ^ Wang J, Yu JT, Tan L (April 2015). "PLD3 in Alzheimer's disease". Molecular Neurobiology. 51 (2): 480–6. doi:10.1007/s12035-014-8779-5. PMID 24935720. S2CID 15700225.
  16. ^ Nibbeling EA, Duarri A, Verschuuren-Bemelmans CC, et al. (November 2017). "Exome sequencing and network analysis identifies shared mechanisms underlying spinocerebellar ataxia". Brain. 140 (11): 2860–2878. doi:10.1093/brain/awx251. PMID 29053796.