 | |
| Initial release | 2008 |
|---|---|
| Stable release | 3.3.0
/ January 28, 2018 |
| Repository | |
| Written in | Java |
| Operating system | Any (Java-based) |
| Type | Pathways editing, analysis, visualization |
| License | Apache 2.0 |
| Website | www |
PathVisio is a free open-source pathway analysis and drawing software. It allows drawing, editing, and analyzing biological pathways. Visualization of ones experimental data on the pathways for finding relevant pathways that are over-represented in your data set is possible.[1][2][3]
PathVisio provides a basic set of features for pathway drawing, analysis and visualization.[4][5] Additional features are available as plugins.
- ^ "What is PathVisio?". Archived from the original on 23 September 2013. Retrieved 19 September 2013.
- ^ van Iersel, Martijn P; Kelder, Thomas; Pico, Alexander R; Hanspers, Kristina; Coort, Susan; Conklin, Bruce R; Evelo, Chris (2008). "Presenting and exploring biological pathways with PathVisio". BMC Bioinformatics. 9 (1): 399. doi:10.1186/1471-2105-9-399. ISSN 1471-2105. PMC 2569944. PMID 18817533.
- ^ Kutmon, Martina; van Iersel, Martijn P.; Bohler, Anwesha; Kelder, Thomas; Nunes, Nuno; Pico, Alexander R.; Evelo, Chris T.; Murphy, Robert F. (23 February 2015). "PathVisio 3: An Extendable Pathway Analysis Toolbox". PLOS Computational Biology. 11 (2): e1004085. Bibcode:2015PLSCB..11E4085K. doi:10.1371/journal.pcbi.1004085. PMC 4338111. PMID 25706687.
- ^ Jaiswal, Pankaj; Usadel, Björn (2016). "Chapter 4: Plant Pathway Databases". Plant Bioinformatics. Springer. pp. 71–87. ISBN 978-1-4939-3166-8.
- ^ Habermann, Bianca; Villaveces, Jose; Koti, Prasanna (June 2015). "Tools for visualization and analysis of molecular networks, pathways, and -omics data". Advances and Applications in Bioinformatics and Chemistry. 8: 11–22. doi:10.2147/AABC.S63534. PMC 4461095. PMID 26082651.