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(major groups

Mesomycetozoea)

Jakobida

Jakobida	Andaluciidae Histionidae Jakobidae Moramonadidae Ophirinidae Stygiellidae

Tsukubamonada

Tsukubamonadida	Tsukubamonadidae

Pharyngomonada

Pharyngomonadidea	Pharyngomonadida Pharyngomonadidae

Tetramitia

Lunosea

Selenaionida
- Selenaionidae

Neovahlkampfiea

Neovahlkampfiida
- Neovahlkampfiidae

Eutetramitia

Lyromonadea	Lyromonadida Gruberellidae Paravahlkampfiidae Plaesiobystridae Psalteriomonadidae
Heterolobosea	Acrasida Acrasidae Naegleriida Tulamoebidae Naegleriidae Tetramitida Vahlkampfiidae Creneida Creneidae Percolomonadida Barbeliidae Lulidae Percolomonadidae Stephanopogonidae

Postgaardea	Bihospitida Bihospitidae Postgaardida Calkinsiidae Postgaardidae

Diplonemida

Bordnamonadidae Trypanophididae
Prokinetoplastina	Prokinetoplastida Ichthyobodonidae Perkinselidae
Metakinetoplastina	Neobodonida Allobodonidae Neobodonidae Rhynchomonadidae Parabodonida Parabodonidae Trypanoplasmatidae Bodonida Bodonidae Trypanosomatida Trypanosomatidae

Petalomonadea

Petalomonadida
- Petalomonadidae
- Sphenomonadidae

Alistosa

Entosiphonea

Entosiphonida
- Entosiphonidae

Karavia

Hemiolia
Liburna

Spirocuta

Anisonemea	Anisonemida Anisonemidae Heteronematales Heteronemataceae Natomonadida Astasiidae Distigmidae Neometanemidae
Peranemea	Acroglissida Teloproctidae Peranematida Peranemataceae
Euglenophyceae	Rapazida Rapazidae Euglenomonadales Euglenomonadaceae Eutreptiales Eutreptiaceae Euglenales Euglenaceae Euglenamorphaceae Euglenocapsaceae Phacaceae

Malawimonadida	Imasidae Malawimonadidae

Planomonada

Planomonadea

Ancyromonadida	Ancyromonadidae Planomonadidae

Anaeromonadea	Paratrimastigida Paratrimastigidae Trimastigida Trimastigidae Oxymonadida Oxymonadidae Polymastigidae Pyrsonymphidae Saccinobaculidae Streblomastigidae

Anaeramoebidae

Kipferliidae
Carpediemonadea	Carpediemonadida Carpediemonadidae
Eopharyngia	Diplomonadida Giardiidae Octomitidae Spironucleidae Hexamitidae Dysnectida Dysnectidae Retortamonadida Caviomonadidae Chilomastigidae Retortamonadidae

Trichonymphea	Trichonymphida †Burmanymphidae Hoplonymphidae Spirotrichosomidae Staurojoeninidae Teratonymphidae Trichonymphidae
Trichomonadea	Hexamastigidae Cristamonadida Calonymphidae Devescovinidae Hypotrichomonadida Hypotrichomonadidae Spirotrichonymphida Spirotrichonymphidae Trichomonadida Honigbergiellidae Tricercomitidae Trichomonadidae Tritrichomonadida Dientamoebidae Monocercomonadidae Simplicimonadidae Tritrichomonadidae