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| Host school | University of the East | |||||||||||||||
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| Duration | September 24 to October 2 | |||||||||||||||
| Arena(s) | Araneta Coliseum | |||||||||||||||
| Finals MVP | Jojo Duncil | |||||||||||||||
| Winning coach | Pido Jarencio | |||||||||||||||
| Semifinalists |  UE Red Warriors Adamson Soaring Falcons | |||||||||||||||
| TV network(s) | Studio 23 and TFC | |||||||||||||||
The men's basketball tournaments of UAAP Season 69 (A.Y. 2006-07) started on July 8, 2006 at the Araneta Coliseum and ended on October 2, 2006 also at the same venue with the UST Growling Tigers defeating the Ateneo Blue Eagles in the third game of their Finals series. Ateneo finished first in the elimination round. They eliminated the Adamson Soaring Falcons, who are in their Final Four debut, in the semifinals. UST finished tied for third in the eliminations and had to beat the 2nd seed UE Red Warriors twice in order to qualify at the Finals.
2005 losing finalists De La Salle Green Archers were suspended when it was revealed that two players used spurious documents to enter college. All of their wins from 2003 to 2005 were also forfeited. La Salle's suspension also caused the suspension of the 2005 juniors champions De La Salle Junior Archers. All La Salle teams would return in the 2007 season.