AspS RNA motif

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aspS
Consensus secondary structure and sequence conservation of aspS RNA
Identifiers
Symbol	aspS
Rfam	RF02930
Other data
RNA type	Cis-reg
SO	SO:0005836
PDB structures	PDBe

The aspS RNA motif is a conserved RNA structure that was discovered by bioinformatics.^[1] aspS motifs are found in a specific lineage of Actinomycetota.

aspS motif RNAs likely function as cis-regulatory elements, in view of their positions upstream of protein-coding genes. Instances of the aspS RNA motif are often located nearby to the predicted Shine-Dalgarno sequence of the downstream gene. This arrangement is consistent with a model of cis-regulation where the RNA allosterically controls access to the Shine-Dalgarno sequence, thus regulating the gene translationally.

aspS genes encode aminoacyl tRNA synthetases. T-box leader RNAs detect low levels of various amino acids, and regulate genes in a cis-regulatory manner. Genes regulated by T-box RNAs often include aminoacyl tRNA synthetases. It is possible that aspS RNAs are diverged examples of T-box RNAs, or they might implement a different structural solution to the same biological problem.