Bioimage informatics

Bioimage informatics is a subfield of bioinformatics and computational biology.[1] It focuses on the use of computational techniques to analyze bioimages, especially cellular and molecular images, at large scale and high throughput. The goal is to obtain useful knowledge out of complicated and heterogeneous image and related metadata.

Automated microscopes are able to collect large numbers of images with minimal intervention. This has led to a data explosion, which absolutely requires automatic processing. Additionally, and surprisingly, for several of these tasks, there is evidence that automated systems can perform better than humans.[2][3] In addition, automated systems are unbiased, unlike human based analysis whose evaluation may (even unconsciously) be influenced by the desired outcome.

There has been an increasing focus on developing novel image processing, computer vision, data mining, database and visualization techniques to extract, compare, search and manage the biological knowledge in these data-intensive problems.[4][5]

  1. ^ Peng, H; Bateman A; Valencia A; Wren JD (2012). "Bioimage informatics: a new category in Bioinformatics". Bioinformatics. 28 (8): 1057. doi:10.1093/bioinformatics/bts111. PMC 3324521. PMID 22399678.
  2. ^ Murphy, Robert; Velliste, M.; Porreca, G. (2003). "Robust numerical features for description and classification of subcellular location patterns in fluorescence microscope images". The Journal of VLSI Signal Processing. 35 (3): 311–321. CiteSeerX 10.1.1.186.9521. doi:10.1023/b:vlsi.0000003028.71666.44. S2CID 8134907.
  3. ^ Nattkemper, Tim; Thorsten Twellmann; Helge Ritter; Walter Schubert (2003). "Human vs. machine: evaluation of fluorescence micrographs". Computers in Biology and Medicine. 33 (1): 31–43. CiteSeerX 10.1.1.324.4664. doi:10.1016/S0010-4825(02)00060-4. PMID 12485628.
  4. ^ Peng H (September 2008). "Bioimage informatics: a new area of engineering biology". Bioinformatics. 24 (17): 1827–36. doi:10.1093/bioinformatics/btn346. PMC 2519164. PMID 18603566.
  5. ^ "The quest for quantitative microscopy". Nature Methods. 9 (7): 627. 2012. doi:10.1038/nmeth.2102. PMID 22930824.