Biological Magnetic Resonance Data Bank

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Biological Magnetic Resonance Data Bank
Content
DescriptionRepository of NMR data from biological molecules
Data types
captured		NMR data from peptides, proteins, nucleic acids and other biologically relevant molecules
Access
Data formatNMR-STAR 3.1
Websitehttp://www.bmrb.wisc.edu/
Download URL[1]
Miscellaneous
LicensePublic domain

The Biological Magnetic Resonance Data Bank (BioMagResBank or BMRB) is an open access repository of nuclear magnetic resonance (NMR) spectroscopic data from peptides, proteins, nucleic acids and other biologically relevant molecules.[1] The database is operated by the University of Wisconsin–Madison and is supported by the National Library of Medicine. The BMRB is part of the Research Collaboratory for Structural Bioinformatics[2] and, since 2006, it is a partner in the Worldwide Protein Data Bank (wwPDB).[3] The repository accepts NMR spectral data from laboratories around the world and, once the data is validated, it is available online at the BMRB website. The database has also an ftp site, where data can be downloaded in the bulk.[1] The BMRB has two mirror sites, one at the Protein Database Japan (PDBj) at Osaka University and one at the Magnetic Resonance Research Center (CERM) at the University of Florence in Italy. The site at Japan accepts and processes data depositions.[4]

  1. ^ a b Ulrich, E.L.; Akutsu, H.; Doreleijers, J.F.; Harano, Y.; Ioannidis, Y.E.; Lin, J.; Livny, M.; Mading, S.; Maziuk, D.; Miller, Z.; Nakatami, E.; Schulte, C.F.; Tolmie, D.E.; Wenger, R.K.; Yao, H.; Markley, J.L. (2008). "BioMagResBank". Nucleic Acids Research. 36 (suppl_1): D402–D408. doi:10.1093/nar/gkm957. PMC 2238925. PMID 17984079.
  2. ^ Berman, H.M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T.N.; Weissig, H.; Shindyalov, I.N.; Bourne, P.E. (2006). Chapter 24.5. The Protein Data Bank, 1999-. Vol. F. pp. 675–684. doi:10.1107/97809553602060000722. ISBN 978-0-7923-6857-1. Archived from the original on 18 January 2018. Retrieved 31 December 2017. {{cite book}}: |journal= ignored (help)
  3. ^ Berman, H.; Henrick, K.; Nakamura, H.; Markley, J.L. (2007). "The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data". Nucleic Acids Research. 35 (suppl_1): D301–D303. doi:10.1093/nar/gkl971. PMC 1669775. PMID 17142228.
  4. ^ Ulrich, E.L.; Markley, J.L. (2013). "BMRB". In Roberts, G.C.K. (ed.). Encyclopedia of Biophysics. Berlin, Heidelberg: Springer. pp. 195–196. doi:10.1007/978-3-642-16712-6_315. ISBN 978-3-642-16711-9.