D. E. Shaw Research

D. E. Shaw Research
Company type	Private
Headquarters	New York City , United States
Key people	David E. Shaw
Products	Desmond; Anton;
Website	www.deshawresearch.com

D. E. Shaw Research (DESRES) is a privately held biochemistry research company based in New York City. Under the scientific direction of David E. Shaw, the group's chief scientist, D. E. Shaw Research develops technologies for molecular dynamics simulations (including Anton,^[1]^[2] a massively parallel special-purpose supercomputer, and Desmond,^[3] a software package for use on conventional computers and computer clusters) and applies such simulations to basic scientific research in structural biology and biochemistry, and to the process of computer-aided drug design.

This interdisciplinary laboratory is composed of members with backgrounds in chemistry, biology, hardware engineering and design, computer science, or applied mathematics. In addition to its main New York facility, D. E. Shaw Research has offices in Durham, North Carolina and Hyderabad, India.

^ Shaw, D.E.; Chao, Jack C.; Eastwood, Michael P.; Gagliardo, Joseph; Grossman, J. P.; Ho, C. Richard; Ierardi, Douglas J.; Kolossváry, István; et al. (May 2007). "Anton, a special-purpose machine for molecular dynamics simulation". ACM SIGARCH Computer Architecture News. 35 (2). ACM: 1. CiteSeerX 10.1.1.501.3288. doi:10.1145/1273440.1250664.
^ David E. Shaw; Ron O. Dror; John K. Salmon; J.P. Grossman; Kenneth M. Mackenzie; Joseph A. Bank; Cliff Young; Martin M. Deneroff; Brannon Batson; Kevin J. Bowers; Edmond Chow; Michael P. Eastwood; Douglas J. Ierardi; John L. Klepeis; Jeffrey S. Kuskin; Richard H. Larson; Kresten Lindorff-Larsen; Paul Maragakis; Mark A. Moraes; Stefano Piana; Yibing Shan; Brian Towles (2009). "Millisecond-scale molecular dynamics simulations on Anton". Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis - SC '09. p. 1. doi:10.1145/1654059.1654099. ISBN 978-1-60558-744-8. S2CID 4390504.
^ Kevin J. Bowers; Edmond Chow; Huafeng Xu; Ron O. Dror; Michael P. Eastwood; Brent A. Gregersen; John L. Klepeis; István Kolossváry; Mark A. Moraes; Federico D. Sacerdoti; John K. Salmon; Yibing Shan; David E. Shaw (2006). "Scalable Algorithms for Molecular Dynamics Simulations on Commodity Clusters" (PDF). ACM/IEEE SC 2006 Conference (SC'06). ACM. p. 43. doi:10.1109/SC.2006.54. ISBN 978-0-7695-2700-0. Archived from the original (PDF) on 2008-08-28. Retrieved 2009-01-30.

[1] Shaw, D.E.; Chao, Jack C.; Eastwood, Michael P.; Gagliardo, Joseph; Grossman, J. P.; Ho, C. Richard; Ierardi, Douglas J.; Kolossváry, István; et al. (May 2007). "Anton, a special-purpose machine for molecular dynamics simulation". ACM SIGARCH Computer Architecture News. 35 (2). ACM: 1. CiteSeerX 10.1.1.501.3288. doi:10.1145/1273440.1250664.

[2] David E. Shaw; Ron O. Dror; John K. Salmon; J.P. Grossman; Kenneth M. Mackenzie; Joseph A. Bank; Cliff Young; Martin M. Deneroff; Brannon Batson; Kevin J. Bowers; Edmond Chow; Michael P. Eastwood; Douglas J. Ierardi; John L. Klepeis; Jeffrey S. Kuskin; Richard H. Larson; Kresten Lindorff-Larsen; Paul Maragakis; Mark A. Moraes; Stefano Piana; Yibing Shan; Brian Towles (2009). "Millisecond-scale molecular dynamics simulations on Anton". Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis - SC '09. p. 1. doi:10.1145/1654059.1654099. ISBN 978-1-60558-744-8. S2CID 4390504.

[3] Kevin J. Bowers; Edmond Chow; Huafeng Xu; Ron O. Dror; Michael P. Eastwood; Brent A. Gregersen; John L. Klepeis; István Kolossváry; Mark A. Moraes; Federico D. Sacerdoti; John K. Salmon; Yibing Shan; David E. Shaw (2006). "Scalable Algorithms for Molecular Dynamics Simulations on Commodity Clusters" (PDF). ACM/IEEE SC 2006 Conference (SC'06). ACM. p. 43. doi:10.1109/SC.2006.54. ISBN 978-0-7695-2700-0. Archived from the original (PDF) on 2008-08-28. Retrieved 2009-01-30.

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