GENESIS (software)

Original author(s)Dr. James M. Bower
Initial release1988
Stable release
2.4[1] / November 2014; 10 years ago (2014-11)[1]
Repository
Written inC[2]
Operating systemUnix-like, macOS, Windows (using Cygwin)[2]
TypeSimulation environment
LicenseGPL[3]
Websitegenesis-sim.org

GENESIS (The General Neural Simulation System) is a simulation environment for constructing realistic models of neurobiological systems at many levels of scale including: sub-cellular processes, individual neurons, networks of neurons, and neuronal systems. These simulations are “computer-based implementations of models whose primary objective is to capture what is known of the anatomical structure and physiological characteristics of the neural system of interest”.[4] GENESIS is intended to quantify the physical framework of the nervous system in a way that allows for easy understanding of the physical structure of the nerves in question. “At present only GENESIS allows parallelized modeling of single neurons and networks on multiple-instruction-multiple-data parallel computers.”[5] Development of GENESIS software spread from its home at Caltech to labs at the University of Texas at San Antonio, the University of Antwerp, the National Centre for Biological Sciences in Bangalore, the University of Colorado, the Pittsburgh Supercomputing Center, the San Diego Supercomputer Center, and Emory University.

  1. ^ a b "The GENESIS 2 simulator home page". GENESIS project. Retrieved 26 December 2015.
  2. ^ a b "Platforms". GENESIS project. Archived from the original on 8 July 2016. Retrieved 1 October 2016.
  3. ^ "The Ultimate GENESIS 2.3 CDROM Distribution". GENESIS project. Retrieved 26 December 2015.
  4. ^ (Bower, Beeman, and Hucka. GENESIS Simulation Software. 1998)
  5. ^ (A consumer guide to neuronal modeling software TRENDS IN NEUROSCIENCES 15: 462-464, 1992 Copyright © Elsevier Science Publishers Ltd, (UK), 1992 E. De Schutter Division of Biology 216-76, California Institute of Technology, Pasadena, CA 91125, USA)