It is now assumed that Gnathostomata evolved from ancestors that already possessed a pair of both pectoral and pelvic fins.[7] Until recently these ancestors, known as antiarchs, were thought to have lacked pectoral or pelvic fins.[7] In addition to this, some placoderms (extinct fish with bony plates) were shown to have a third pair of paired appendages, that had been modified to claspers in males and basal plates in females—a pattern not seen in any other vertebrate group.[8]
Jaw development in vertebrates is likely a product of the supporting gill arches. This development would help push water into the mouth by the movement of the jaw, so that it would pass over the gills for gas exchange. The repetitive use of the newly formed jaw bones would eventually lead to the ability to bite in some gnathostomes.[11]
Newer research suggests that a branch of Placoderms was most likely the ancestor of present-day gnathostomes. A 419-million-year-old fossil of a placoderm named Entelognathus had a bony skeleton and anatomical details associated with cartilaginous and bony fish, demonstrating that the absence of a bony skeleton in Chondrichthyes is a derived trait.[12] The fossil findings of primitive bony fishes such as Guiyu oneiros and Psarolepis, which lived contemporaneously with Entelognathus and had pelvic girdles more in common with placoderms than with other bony fish, show that it was a relative rather than a direct ancestor of the extant gnathostomes.[13] It also indicates that spiny sharks and Chondrichthyes represent a single sister group to the bony fishes.[12] Fossil findings of juvenile placoderms, which had true teeth that grew on the surface of the jawbone and had no roots, making them impossible to replace or regrow as they broke or wore down as they grew older, proves the common ancestor of all gnathostomes had teeth and place the origin of teeth along with, or soon after, the evolution of jaws.[14][15]
Late Ordovician-aged microfossils of what have been identified as scales of either acanthodians[16] or "shark-like fishes",[17] may mark Gnathostomata's first appearance in the fossil record. Undeniably unambiguous gnathostome fossils, mostly of primitive acanthodians, begin appearing by the early Silurian, and become abundant by the start of the Devonian.
^Rodriguez-Pascual, Fernando (27 October 2021), "The Evolutionary Origin of Elastin: Is Fibrillin the Lost Ancestor?", in Sashank Madhurapantula, Rama; Orgel P.R.O., Joseph; Loewy, Zvi (eds.), Extracellular Matrix - Developments and Therapeutics, Biochemistry, vol. 23, IntechOpen, doi:10.5772/intechopen.95411, ISBN978-1-83968-235-3, S2CID233943453
^Sansom, Ivan J.; Smith, Moya M.; Smith, M. Paul (15 February 1996). "Scales of thelodont and shark-like fishes from the Ordovician of Colorado". Nature. 379 (6566): 628–630. Bibcode:1996Natur.379..628S. doi:10.1038/379628a0. S2CID4257631.