Isoaspartate

Isoaspartyl formation reaction of Asn-Gly (top right) to Asp-Gly (at left) or iso(Asp)-Gly (in green at bottom right).

Isoaspartic acid (isoaspartate, isoaspartyl, β-aspartate) is an aspartic acid residue isomeric to the typical α peptide linkage. It is a β-amino acid, with the side chain carboxyl moved to the backbone. Such a change is caused by a chemical reaction in which the nitrogen atom on the N+1 following peptide bond (in black at top right of Figure 1) nucleophilically attacks the γ-carbon of the side chain of an asparagine or aspartic acid residue, forming a succinimide intermediate (in red). Hydrolysis of the intermediate results in two products, either aspartic acid (in black at left) or isoaspartic acid, which is a β-amino acid (in green at bottom right).[1] The reaction also results in the deamidation of the asparagine residue. Racemization may occur leading to the formation of D-aminoacids.[2]

  1. ^ Clarke S (1987). "Propensity for spontaneous succinimide formation from aspartyl and asparaginyl residues in cellular proteins". International Journal of Peptide and Protein Research. 30 (6): 808–821. doi:10.1111/j.1399-3011.1987.tb03390.x. PMID 3440704.
  2. ^ Yang H, Zubarev RA (2010). "Mass spectrometric analysis of asparagine deamidation and aspartate isomerization in polypeptides". Electrophoresis. 31 (11): 1764–1772. doi:10.1002/elps.201000027. PMC 3104603. PMID 20446295.