Iterative Viterbi decoding

Iterative Viterbi decoding is an algorithm that spots the subsequence S of an observation O = {o1, ..., on} having the highest average probability (i.e., probability scaled by the length of S) of being generated by a given hidden Markov model M with m states. The algorithm uses a modified Viterbi algorithm as an internal step.

The scaled probability measure was first proposed by John S. Bridle. An early algorithm to solve this problem, sliding window, was proposed by Jay G. Wilpon et al., 1989, with constant cost T = mn2/2.

A faster algorithm consists of an iteration of calls to the Viterbi algorithm, reestimating a filler score until convergence.