Pelly Crossing is a community in Yukon, Canada. It lies where the Klondike Highway crosses the Pelly River.
It is the home of the Selkirk First Nation, and home to the Northern Tutchone culture. Cultural displays and artifacts are housed in a replica of Big Jonathan House. Visitors can make the journey from Minto by boat to visit the original structure down the Yukon River at Fort Selkirk, an important historic and cultural site for the Northern Tutchone people.