 | |
| Content | |
|---|---|
| Description | The Pfam database provides alignments and hidden Markov models for protein domains. |
| Data types captured | Protein families |
| Organisms | all |
| Contact | |
| Research center | EBI |
| Primary citation | PMID 19920124 |
| Access | |
| Data format | Stockholm format |
| Website | www |
| Download URL | FTP |
| Miscellaneous | |
| License | GNU Lesser General Public License |
| Version | 37.0 |
| Bookmarkable entities | yes |
Pfam is a database of protein families that includes their annotations and multiple sequence alignments generated using hidden Markov models.[1][2][3] The latest version of Pfam, 37.0, was released in June 2024 and contains 21,979 families.[4] It is currently provided through InterPro website.
- ^ Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer EL, Bateman A (2008). "The Pfam protein families database". Nucleic Acids Res. 36 (Database issue): D281–8. doi:10.1093/nar/gkm960. PMC 2238907. PMID 18039703.
- ^ Finn, R. D.; Mistry, J.; Schuster-Böckler, B.; Griffiths-Jones, S.; Hollich, V.; Lassmann, T.; Moxon, S.; Marshall, M.; Khanna, A.; Durbin, R.; Eddy, S. R.; Sonnhammer, E. L.; Bateman, A. (January 2006). "Pfam: clans, web tools and services" (Free full text). Nucleic Acids Research. 34 (Database issue): D247–D251. doi:10.1093/nar/gkj149. ISSN 0305-1048. PMC 1347511. PMID 16381856.
- ^ Bateman, A.; Coin, L.; Durbin, R.; Finn, R. D.; Hollich, V.; Griffiths-Jones, S.; Khanna, A.; Marshall, M.; Moxon, S.; Sonnhammer, E. L.; Studholme, D. J.; Yeats, C.; Eddy, S. R. (2004). "The Pfam protein families database". Nucleic Acids Research. 32 (Database issue): 138D–1141. doi:10.1093/nar/gkh121. ISSN 0305-1048. PMC 308855. PMID 14681378.
- ^ "Xfam Blog". Xfam Blog. Retrieved 10 September 2024.
