Whalefall-1 RNA motif

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Whalefall-1 RNA motif
Consensus secondary structure of Whalefall-1 RNAs
Identifiers
Symbol	wf-1
Rfam	RF01762
Other data
RNA type	sRNA
Domain(s)	Whale fall metagenome
PDB structures	PDBe

The Whalefall-1 RNA motif (also called wf-1) refers to a conserved RNA structure that was discovered using bioinformatics.^[1][2] Structurally, the motif consists of two stem-loops (see diagram), the second of which is often terminated by a CUUG tetraloop, which is an energetically favorable RNA sequence. Whalefall-1 RNAs are found only in DNA extracted from uncultivated bacteria found on whale fall, i.e., a whale carcass. As of 2010, Whalefall-1 RNAs have not been detected in any known, cultivated species of bacteria, and are thus one of several RNAs present in environmental samples.