 | |
| Content | |
|---|---|
| Description | A wiki-based resource for collection, maintenance and distribution of biological pathways |
| Contact | |
| Primary citation | PMID 18651794 |
| Access | |
| Data format | GPML BioPAX |
| Website | http://www.wikipathways.org |
| Download URL | Pathways |
| Web service URL | REST |
| Sparql endpoint | http://sparql.wikipathways.org/sparql |
| Miscellaneous | |
| License | Creative Commons 0 |
| Data release frequency | monthly |
WikiPathways[1][2] is a community resource for contributing and maintaining content dedicated to biological pathways. Any registered WikiPathways user can contribute, and anybody can become a registered user.[3] Contributions are monitored by a group of admins, but the bulk of peer review, editorial curation, and maintenance is the responsibility of the user community. WikiPathways is originally built using MediaWiki software,[4] a custom graphical pathway editing tool (PathVisio[5]) and integrated BridgeDb[6] databases covering major gene, protein, and metabolite systems. WikiPathways was founded in 2008 by Thomas Kelder, Alex Pico, Martijn Van Iersel, Kristina Hanspers, Bruce Conklin and Chris Evelo. Current architects are Alex Pico and Martina Summer-Kutmon.
- ^ Alexander R Pico; Thomas Kelder; Martijn P van Iersel; Kristina Hanspers; Bruce R Conklin; Chris Evelo (22 July 2008). "WikiPathways: pathway editing for the people". PLOS Biology. 6 (7): e184. doi:10.1371/JOURNAL.PBIO.0060184. ISSN 1544-9173. PMC 2475545. PMID 18651794. Wikidata Q21092742.
- ^ Martina Summer-Kutmon; Anders Riutta; Nuno Nunes; et al. (4 January 2016). "WikiPathways: capturing the full diversity of pathway knowledge". Nucleic Acids Research. 44 (D1): D488-94. doi:10.1093/NAR/GKV1024. ISSN 0305-1048. PMC 4702772. PMID 26481357. Wikidata Q24082733.
- ^ Marvin Martens; Ammar Ammar; Anders Riutta; et al. (8 January 2021). "WikiPathways: connecting communities". Nucleic Acids Research. 49 (D1): D613–D621. doi:10.1093/NAR/GKAA1024. ISSN 0305-1048. PMC 7779061. PMID 33211851. Wikidata Q102205677.
- ^ Agrawal, Ayushi; Balcı, Hasan; Hanspers, Kristina; Coort, Susan L; Martens, Marvin; Slenter, Denise N; Ehrhart, Friederike; Digles, Daniela; Waagmeester, Andra; Wassink, Isabel; Abbassi-Daloii, Tooba; Lopes, Elisson N; Iyer, Aishwarya; Acosta, Javier Millán; Willighagen, Lars G; Nishida, Kozo; Riutta, Anders; Basaric, Helena; Evelo, Chris T; Willighagen, Egon L; Kutmon, Martina; Pico, Alexander R (6 November 2023). "WikiPathways 2024: next generation pathway database". Nucleic Acids Research. 52 (D1): D679–D689. doi:10.1093/nar/gkad960. PMC 10767877. PMID 37941138.
- ^ Martijn P van Iersel; Thomas Kelder; Alexander R Pico; Kristina Hanspers; Susan Coort; Bruce R Conklin; Chris Evelo (2008). "Presenting and exploring biological pathways with PathVisio". BMC Bioinformatics. 9 (1): 399. doi:10.1186/1471-2105-9-399. ISSN 1471-2105. PMC 2569944. PMID 18817533. Wikidata Q21284199.
- ^ Martijn P van Iersel; Alexander R. Pico; Thomas Kelder; Jianjiong Gao; Isaac Ho; Kristina Hanspers; Bruce R Conklin; Chris T. Evelo (4 January 2010). "The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services". BMC Bioinformatics. 11 (1): 5. doi:10.1186/1471-2105-11-5. ISSN 1471-2105. PMC 2824678. PMID 20047655. Wikidata Q28842753.